| 1. | |
How plant genomes are organized (1) | advantages of arabidopsis thaliane for genomics |  |
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How plant genomes are organized (2) | advantages of arabidopsis thaliane for genomics | |
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| 2. | |
The Arabidopsis Genome | Arabidosis Genome SequencingConsortium | |
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US Department of Energy(DOE) Historic Role in Genome Research | Major Findings form the Populus genome sequence | |
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| 3. | |
Analyzing genes and using sequence databases. | Assemble sequences Into contigs, genes, scaffolds, chromosomes Store sequence (database) Find genes Find similar genes in model species Gene annotation Find other gene family members In same species and among species Phylogenetic analysis Comparative genome analysis |
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| 4. | |
Bioinformatics and its role in bioenergy sciences (1) | step in date Analysis "order form chaos"/Getting all genes back | |
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Bioinformatics and its role in bioenergy sciences (2) | step in date Analysis "order form chaos"/Getting all genes back | |
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| 5. | |
Homework (1) | Homework | |
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Homework (2) | Homework | |
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| 6. | |
Analyzing genes,gene families,and genomes 1 | sequencing,assemble sequences,store sequence,find genes,find similar genes in model species | |
| 7. | |
Analyzing genes,gene families,and genomes 2 | multiple gene or protein alignment, comparative scafloding | |
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Analyzing genes,gene families,and genomes 2 | graph | |
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| 8. | |
What is proteomics? | Branches of Proteomics | |
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Protein Identification | Protein Identification | |
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| 9. | |
Bioinformatics class Projects (1) | Sequence assembly and Clc Bio Software | |
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Bioinformatics class Projects (2) | Sequence assembly and Clc Bio Software | |
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| 10. | |
Introduction of Clc bio Software and interested data set | Project reports | |
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CLC Bio Genomics Workbench Sequence Assembly and Analysis Steps | CLC Bio Genomics Workbench Sequence Assembly and Analysis Steps | |
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| 11. | |
Bioinformatics class Projects | Bioinformatics class Projects | |
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Bioenergy plants and microbes | Bioenergy feedstock organisms for a,Biodiesel b,starch c,cellulose | |
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| 12. | |
Transcriptome Analysis 1 | Transcriptome Analysis | |
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Transcriptome Analysis 2 | Transcriptome Analysis | |
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